Publications :: My peer-reviewed papers.


Note: If you have trouble accessing any of my articles for whatever reason, then just contact me and I will get you sorted out.

Journal articles

Title & Authors Year Journal
Theme Enrichment Analysis: A Statistical Test for Identifying Significantly Enriched Themes in a List of Stories with an Application to the Star Trek Television Franchise [ arXiv link ]
M. Onsjö, Paul Sheridan
2017 Under review
PAFit: An R Package for Modeling and Estimating Preferential Attachment and Node Fitness in Temporal Complex Networks [ arXiv link ]
T. Pham, Paul Sheridan, H. Shimodaira
2017 Under review
A Preferential Attachment Paradox: How does Preferential Attachment Combine with Growth to Produce Networks with Log-normal In-degree Distributions? [ arXiv link ]
Paul Sheridan, T. Onodera
2017 Under review
Joint Estimation of Preferential Attachment and Node Fitness in Growing Complex Networks [ link ]
T. Pham, Paul Sheridan, H. Shimodaira
2016 Scientific Reports
Identification of RNA-Binding Protein LARP4B as a Tumor Suppressor in Glioma [ link ]
H. Koso, H. Yi, Paul Sheridan, S. Miyano, Y. Ino, T. Todo, S. Watanabe
2016 Cancer Research
PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks [ link ]
T. Pham, Paul Sheridan, H. Shimodaira
2015 PLoS ONE
The AURKA/TPX2 axis drives colon tumorigenesis cooperatively with MYC [ link ]
Y. Takahashi, Paul Sheridan, A. Niida, G. Sawada, R. Uchi, H. Mizuno, J. Kurashige, K. Sugimachi, S. Sasaki, Y. Shimada, K. Hase, M. Kusunoki, S. Kudo, M. Watanabe, K. Yamada, K. Sugihara, H. Yamamoto, A. Suzuki, Y. Doki, S. Miyano, M. Mori, K. Mimori
2015 Annals of Oncology
Anemia Amelioration by Lactose Infusion During Trypanosomosis Could be Associated with Erythrocytes Membrane De-galactosylation [ link ]
E.O. Balogun, J.B. Balogun, S. Yusuf, H.M. Inuwa, I.S. Ndams, Paul Sheridan, D.K. Inaoka, T. Shiba, S. Harada, K. Kita, K.A.N. Esievo, A.J. Nok
2014 Veterinary Parasitology
Measuring preferential attachment in growing networks with missing-timeline using Markov chain Monte Carlo [ link ]
Paul Sheridan, Y. Yagahara, H. Shimodaira
2012 Physica A
A scale-free structure prior for graphical models with applications in functional genomics [ link ]
Paul Sheridan, T. Kamimura, H. Shimodaira
2010 PLoS ONE
A preferential attachment model with Poisson growth for scale-free networks [ link ]
Paul Sheridan, Y. Yagahara, H. Shimodaira
2008 Annals of the Institute of Statistical Mathematics

Selected conference papers

Title & Authors Year Venue
Nonparametric estimation of the preferential attachment function in complex networks: evidence of deviations from log linearity [ link ]
T. Pham, Paul Sheridan, H. Shimodaira
2015 European Conference on Complex Systems (ECCS'14)
On scale-free priors and their applicability in large-scale network inference with graphical models [ link ]
Paul Sheridan, T. Kamimura, H. Shimodaira
2009 The First International Conference on Complex Sciences: Theory and Applications (Complex'2009)

Recent workshop papers

Title & Authors Year Venue
Maximum likelihood estimation of preferential attachment in growing networks [ pdf ]
T. Onodera, Paul Sheridan
2014 Topologica